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Welcome to AMMNet Hackathon Blog!

Have prepared materials from an AMMnet Hackathon session? Contribute a post so others can learn from them.

Live Session 12: Working with an AI Coding Agent: Epidemic Forecasting from Partial Outbreak Data

AI
Python
Epidemiology
Live session

Work with an AI coding agent to plan, review, and evaluate epidemic forecasts, with human scientific judgment guiding each stage.
Nov 10, 2026
Nguyen Tran

Live Session 11: DHIS2 From Scratch: From an Empty System to a Working Dashboard

DHIS2
Data visualization
Dashboards
Live session

Build a DHIS2 system from the ground up, from local setup and metadata through data entry, indicators, visualizations, and a working dashboard.
Sep 30, 2026
Mohamed Sillah Kanu

Carte raster de la population de la Tanzanie en 2022

Cartographie sous R, 2e partie

R
Spatial data
Data visualization
GIS
Français
Live session

Une session pratique en français consacrée au chargement, à la transformation, à l’analyse et à la visualisation de données raster sous R.
Aug 21, 2026
Gabriel Monteiro

Sessão ao vivo 10: Análise de dados biomédicos reprodutível com R e Quarto

R
Data cleaning
Epidemiology
Quarto
Live session

Construa uma pipeline reprodutível, desde a limpeza de dados epidemiológicos simulados até relatórios e um manuscrito com R e Quarto.
Jul 30, 2026
Arsénio Nhacolo, Arlindo Malheia
Malaria Burden Explorer dashboard showing indicators, a district map, a ranked bar chart, and seasonal trends for Burkina Faso

Live Session 9: Building Interactive Malaria Dashboards with R Shiny

R
Shiny
Data visualization
Dashboards
Live session

Build a reactive malaria dashboard for Burkina Faso with Shiny, bslib, leaflet, and plotly.
Jul 16, 2026
Christina Myalla, Ellie Sherrard-Smith, Justin Millar
AI-Guided SIR Modeling Hackathon infographic

Live Session 8: AI-Guided SIR Modeling Hackathon

Python
Epidemiology
SIR
AI
Live session
This notebook is the workshop skeleton for the AI-Guided SIR Modeling Hackathon.
Mar 2, 2026
Nguyen Tran, Nani Metchanun, Justin Millar

GitHub, R, and Quarto workflow infographic

Live Session 6: GitHub, R & Quarto for Reproducible Public Health Data Science

R
Git
GitHub
Version Control
Live session
This live session introduces a practical workflow for version control and reproducible reporting using GitHub, R, and Quarto. We will move from local projects to…
Jan 5, 2026
Justin Millar

Cartographie sous R – AMMnet Hackathon

Ce document consiste a faire de la cartographie avec des commentaires en français.
Oct 28, 2025
Dr Ousmane Diao

Cleaning and standardising geographic names in R with prep_geonames()

A hands-on workshop for systematic geographic name matching
R
Data cleaning
Geospatial
GIS
Before you begin, we expect participants to have a basic working knowledge of R. If you are new to R or need a refresher, we recommend reviewing the earlier sessions on data…
Sep 1, 2025
Mohamed A Yusuf

Live Session 5: Mapping in R part 2

Rasters
R
Spatial data
Data cleaning
Data visualization
GIS
Live session
If you are present for the live session on Wednesday May 7th 2025, please click here to take the survey.
Apr 17, 2025
Punam Amratia, Herieth Mboya, Jailos Lubinda, Adam Saddler, Paulina Dzianach, Ellie Sherrard-Smith, Justin Millar, Naomi Tedto

Live Session 4: Introduction à la manipulation de données dans R

R
Data cleaning
Data validation
Français
Live session
Si vous êtes présent à la session en direct le lundi 21 octobre, veuillez cliquer ici pour participer à l’enquête.
Apr 9, 2025
Charlène Naomie Tedto Mfangnia, Didier Adjakidje, Lazaro Mwandigha, Christian Selinger, Ellie Sherrard-Smith, Justin Millar

Live Session 3: Introduction to Mapping in R

R
Spatial data
Data cleaning
Data visualization
GIS
Live session
If you are present for the live session on Thursday March 6th 2025, please click here to take the survey.
Feb 20, 2025
Punam Amratia, Jailos Lubinda, Adam Saddler, Paulina Dzianach, Justin Millar, Naomie Tedto

Live Session 2: Introduction to Data Wrangling in R

R
Data cleaning
Data validation
Live session
If you are present for the live session on Monday October 21st, please click here to take the survey.
Oct 14, 2024
Lazaro Mwandigha, Christian Selinger, Ellie Sherrard-Smith, Justin Millar

Live Session 1: Introduction to Data Visualization in R

R
Data Visualization
ggplot2
Live session
This tutorial introduces you to data visualization in R. We will learn how to develop an understanding of our data before visualization, making quick exploratory…
Jul 19, 2024
Justin Millar, Ellie Sherrard-Smith
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